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-rw-r--r--Metrics/Metrics-Calculation/metrics_plot/model_evolve_comparison/src/representative_selector .ipynb88
1 files changed, 60 insertions, 28 deletions
diff --git a/Metrics/Metrics-Calculation/metrics_plot/model_evolve_comparison/src/representative_selector .ipynb b/Metrics/Metrics-Calculation/metrics_plot/model_evolve_comparison/src/representative_selector .ipynb
index 329a46f6..543b0ab7 100644
--- a/Metrics/Metrics-Calculation/metrics_plot/model_evolve_comparison/src/representative_selector .ipynb
+++ b/Metrics/Metrics-Calculation/metrics_plot/model_evolve_comparison/src/representative_selector .ipynb
@@ -16,7 +16,7 @@
16 }, 16 },
17 { 17 {
18 "cell_type": "code", 18 "cell_type": "code",
19 "execution_count": 11, 19 "execution_count": 1,
20 "metadata": {}, 20 "metadata": {},
21 "outputs": [], 21 "outputs": [],
22 "source": [ 22 "source": [
@@ -70,7 +70,7 @@
70 { 70 {
71 "data": { 71 "data": {
72 "text/plain": [ 72 "text/plain": [
73 "304" 73 "231"
74 ] 74 ]
75 }, 75 },
76 "execution_count": 3, 76 "execution_count": 3,
@@ -90,8 +90,7 @@
90 " orientation='horizontal'\n", 90 " orientation='horizontal'\n",
91 ")\n", 91 ")\n",
92 "\n", 92 "\n",
93 "\n", 93 "humanFiles = reader.readmultiplefiles('../input/human_models_75/', 1300, False)\n",
94 "humanFiles = reader.readmultiplefiles('../input/human_output_100/', 1300, False)\n",
95 "modelToFileName = {}\n", 94 "modelToFileName = {}\n",
96 "for name in humanFiles:\n", 95 "for name in humanFiles:\n",
97 " modelToFileName[GraphStat(name)] = name\n", 96 " modelToFileName[GraphStat(name)] = name\n",
@@ -138,20 +137,29 @@
138 "cell_type": "markdown", 137 "cell_type": "markdown",
139 "metadata": {}, 138 "metadata": {},
140 "source": [ 139 "source": [
141 "### Find representative for out degree" 140 "## Find representative for out degree"
142 ] 141 ]
143 }, 142 },
144 { 143 {
145 "cell_type": "markdown", 144 "cell_type": "markdown",
146 "metadata": {}, 145 "metadata": {},
147 "source": [ 146 "source": [
147 "### For Yakindumm\n",
148 "#### For all human models\n", 148 "#### For all human models\n",
149 "* the rep found is ../input/humanOutput\\R_20158_run_1.csv\n", 149 "* the rep found is ../input/humanOutput\\R_20158_run_1.csv\n",
150 "* the average distance between it and others is 0.05515988287586802\n", 150 "* the average distance between it and others is 0.05515988287586802\n",
151 "\n", 151 "\n",
152 "#### For human models with $100 \\pm 10$ nodes\n", 152 "#### For human models with $100 \\pm 10$ nodes\n",
153 "* the rep found is ../input/human_output_100\\R_2015225_run_1.csv\n", 153 "* the rep found is ../input/human_output_100\\R_2015225_run_1.csv\n",
154 "* the average distance between it and others is $0.046150929558524685$" 154 "* the average distance between it and others is $0.046150929558524685$\n",
155 "\n",
156 "#### for human model with $100 \\pm 10$ nodes and new metric\n",
157 "* the rep found is ../input/human_output_100\\R_2015248_run_1.csv\n",
158 "* average distance: 0.052753778714861366\n",
159 "* median: 0.0468131868131868\n",
160 "* std: 0.0246917800149673\n",
161 "* max: 0.15993907083015996\n",
162 "* min: 0.0"
155 ] 163 ]
156 }, 164 },
157 { 165 {
@@ -163,8 +171,8 @@
163 "name": "stdout", 171 "name": "stdout",
164 "output_type": "stream", 172 "output_type": "stream",
165 "text": [ 173 "text": [
166 "../input/human_output_100\\R_2015225_run_1.csv\n", 174 "../input/human_models_75\\146.csv\n",
167 "../input/human_output_100\\R_2015225_run_1.csv\n" 175 "../input/human_models_75\\146.csv\n"
168 ] 176 ]
169 } 177 }
170 ], 178 ],
@@ -177,16 +185,17 @@
177 }, 185 },
178 { 186 {
179 "cell_type": "code", 187 "cell_type": "code",
180 "execution_count": 15, 188 "execution_count": 6,
181 "metadata": {}, 189 "metadata": {},
182 "outputs": [ 190 "outputs": [
183 { 191 {
184 "name": "stdout", 192 "name": "stdout",
185 "output_type": "stream", 193 "output_type": "stream",
186 "text": [ 194 "text": [
187 "average distance: 0.04615092955852465\n", 195 "average distance: 0.14846721554626746\n",
188 "std: 0.017305709419913242\n", 196 "median: 0.11344781014856264\n",
189 "max: 0.1411706837186424\n", 197 "std: 0.0839789139821567\n",
198 "max: 0.40999194198227235\n",
190 "min: 0.0\n" 199 "min: 0.0\n"
191 ] 200 ]
192 } 201 }
@@ -196,6 +205,7 @@
196 "for model in models:\n", 205 "for model in models:\n",
197 " distances.append(ks_value(od_rep_model.out_d, model.out_d))\n", 206 " distances.append(ks_value(od_rep_model.out_d, model.out_d))\n",
198 "print('average distance: ', np.mean(distances))\n", 207 "print('average distance: ', np.mean(distances))\n",
208 "print('median: ', np.median(distances))\n",
199 "print('std: ', np.std(distances))\n", 209 "print('std: ', np.std(distances))\n",
200 "print('max:', max(distances))\n", 210 "print('max:', max(distances))\n",
201 "print('min:', min(distances))" 211 "print('min:', min(distances))"
@@ -205,20 +215,29 @@
205 "cell_type": "markdown", 215 "cell_type": "markdown",
206 "metadata": {}, 216 "metadata": {},
207 "source": [ 217 "source": [
208 "### Find Representative for node activities" 218 "## Find Representative for node activities"
209 ] 219 ]
210 }, 220 },
211 { 221 {
212 "cell_type": "markdown", 222 "cell_type": "markdown",
213 "metadata": {}, 223 "metadata": {},
214 "source": [ 224 "source": [
225 "### For Yakindumm\n",
215 "#### For all human models\n", 226 "#### For all human models\n",
216 "* the rep found is ../input/humanOutput\\R_2016176_run_1.csv\n", 227 "* the rep found is ../input/humanOutput\\R_2016176_run_1.csv\n",
217 "* the average distance between it and others is 0.05275267434589047\n", 228 "* the average distance between it and others is 0.05275267434589047\n",
218 "\n", 229 "\n",
219 "#### For human models with $100 \\pm 10$ nodes\n", 230 "#### For human models with $100 \\pm 10$ nodes\n",
220 "* the rep found is ../input/human_output_100\\R_2017419_run_1.csv\n", 231 "* the rep found is ../input/human_output_100\\R_2017419_run_1.csv\n",
221 "* the average distance between it and others is $0.04679429311806747$" 232 "* the average distance between it and others is $0.04679429311806747$\n",
233 "\n",
234 "#### for human model with $100 \\pm 10$ nodes and new metric\n",
235 "* the rep found is ../input/human_output_100\\R_2017131_run_1.csv\n",
236 "* average distance: 0.024629205820449567\n",
237 "* median: 0.023787888564682946\n",
238 "* std: 0.013845547883198073\n",
239 "* max: 0.09044674910251294\n",
240 "* min: 0.0"
222 ] 241 ]
223 }, 242 },
224 { 243 {
@@ -230,8 +249,8 @@
230 "name": "stdout", 249 "name": "stdout",
231 "output_type": "stream", 250 "output_type": "stream",
232 "text": [ 251 "text": [
233 "../input/human_output_100\\R_2017419_run_1.csv\n", 252 "../input/human_models_75\\97.csv\n",
234 "../input/human_output_100\\R_2017419_run_1.csv\n" 253 "../input/human_models_75\\97.csv\n"
235 ] 254 ]
236 } 255 }
237 ], 256 ],
@@ -244,16 +263,17 @@
244 }, 263 },
245 { 264 {
246 "cell_type": "code", 265 "cell_type": "code",
247 "execution_count": 14, 266 "execution_count": 8,
248 "metadata": {}, 267 "metadata": {},
249 "outputs": [ 268 "outputs": [
250 { 269 {
251 "name": "stdout", 270 "name": "stdout",
252 "output_type": "stream", 271 "output_type": "stream",
253 "text": [ 272 "text": [
254 "average distance: 0.046794293118067494\n", 273 "average distance: 0.16296252607812808\n",
255 "std: 0.02880119213919405\n", 274 "median: 0.11606886657101867\n",
256 "max: 0.18702970297029703\n", 275 "std: 0.1196590575339798\n",
276 "max: 0.49411764705882355\n",
257 "min: 0.0\n" 277 "min: 0.0\n"
258 ] 278 ]
259 } 279 }
@@ -263,6 +283,7 @@
263 "for model in models:\n", 283 "for model in models:\n",
264 " distances.append(ks_value(na_rep_model.na, model.na))\n", 284 " distances.append(ks_value(na_rep_model.na, model.na))\n",
265 "print('average distance: ', np.mean(distances))\n", 285 "print('average distance: ', np.mean(distances))\n",
286 "print('median: ', np.median(distances))\n",
266 "print('std: ', np.std(distances))\n", 287 "print('std: ', np.std(distances))\n",
267 "print('max:', max(distances))\n", 288 "print('max:', max(distances))\n",
268 "print('min:', min(distances))" 289 "print('min:', min(distances))"
@@ -272,20 +293,29 @@
272 "cell_type": "markdown", 293 "cell_type": "markdown",
273 "metadata": {}, 294 "metadata": {},
274 "source": [ 295 "source": [
275 "### Find Representative for MPC" 296 "## Find Representative for MPC"
276 ] 297 ]
277 }, 298 },
278 { 299 {
279 "cell_type": "markdown", 300 "cell_type": "markdown",
280 "metadata": {}, 301 "metadata": {},
281 "source": [ 302 "source": [
303 "### For Yakindumm\n",
304 "\n",
282 "#### For all human models\n", 305 "#### For all human models\n",
283 "* the rep found is ../input/humanOutput\\R_2015246_run_1.csv\n", 306 "* the rep found is ../input/humanOutput\\R_2015246_run_1.csv\n",
284 "* the average distance between it and others is 0.08556632702185384\n", 307 "* the average distance between it and others is 0.08556632702185384\n",
285 "\n", 308 "\n",
286 "#### For human models with $100 \\pm 10$ nodes\n", 309 "#### For human models with $100 \\pm 10$ nodes\n",
287 "* the rep found is ../input/human_output_100\\R_2016324_run_1.csv\n", 310 "* the rep found is ../input/human_output_100\\R_2016324_run_1.csv\n",
288 "* the average distance between it and others is $0.07028909225833631$" 311 "* the average distance between it and others is $0.07028909225833631$\n",
312 "\n",
313 "#### for human model with $100 \\pm 10$ nodes and new metric\n",
314 "* average distance: 0.054782550772603904\n",
315 "* median: 0.048330503678551184\n",
316 "* std: 0.028208257424907526\n",
317 "* max: 0.21181525241675614\n",
318 "* min: 0.0"
289 ] 319 ]
290 }, 320 },
291 { 321 {
@@ -297,8 +327,8 @@
297 "name": "stdout", 327 "name": "stdout",
298 "output_type": "stream", 328 "output_type": "stream",
299 "text": [ 329 "text": [
300 "../input/human_output_100\\R_2016324_run_1.csv\n", 330 "../input/human_models_75\\151.csv\n",
301 "../input/human_output_100\\R_2016324_run_1.csv\n" 331 "../input/human_models_75\\151.csv\n"
302 ] 332 ]
303 } 333 }
304 ], 334 ],
@@ -311,16 +341,17 @@
311 }, 341 },
312 { 342 {
313 "cell_type": "code", 343 "cell_type": "code",
314 "execution_count": 16, 344 "execution_count": 10,
315 "metadata": {}, 345 "metadata": {},
316 "outputs": [ 346 "outputs": [
317 { 347 {
318 "name": "stdout", 348 "name": "stdout",
319 "output_type": "stream", 349 "output_type": "stream",
320 "text": [ 350 "text": [
321 "average distance: 0.07028909225833632\n", 351 "average distance: 0.18751521685526348\n",
322 "std: 0.03728189051222417\n", 352 "median: 0.13400833829660508\n",
323 "max: 0.21961550993809065\n", 353 "std: 0.13829078925748192\n",
354 "max: 0.5745366639806608\n",
324 "min: 0.0\n" 355 "min: 0.0\n"
325 ] 356 ]
326 } 357 }
@@ -330,6 +361,7 @@
330 "for model in models:\n", 361 "for model in models:\n",
331 " distances.append(ks_value(mpc_rep_model.mpc, model.mpc))\n", 362 " distances.append(ks_value(mpc_rep_model.mpc, model.mpc))\n",
332 "print('average distance: ', np.mean(distances))\n", 363 "print('average distance: ', np.mean(distances))\n",
364 "print('median: ', np.median(distances))\n",
333 "print('std: ', np.std(distances))\n", 365 "print('std: ', np.std(distances))\n",
334 "print('max:', max(distances))\n", 366 "print('max:', max(distances))\n",
335 "print('min:', min(distances))" 367 "print('min:', min(distances))"