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Diffstat (limited to 'Metrics/Metrics-Calculation/ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator/src/ca/mcgill/ecse/dslreasoner/realistic')
-rw-r--r--Metrics/Metrics-Calculation/ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator/src/ca/mcgill/ecse/dslreasoner/realistic/metrics/calculator/app/Domain.xtend5
-rw-r--r--Metrics/Metrics-Calculation/ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator/src/ca/mcgill/ecse/dslreasoner/realistic/metrics/calculator/app/Main.xtend4
-rw-r--r--Metrics/Metrics-Calculation/ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator/src/ca/mcgill/ecse/dslreasoner/realistic/metrics/calculator/app/PartialInterpretationMetric.xtend45
-rw-r--r--Metrics/Metrics-Calculation/ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator/src/ca/mcgill/ecse/dslreasoner/realistic/metrics/calculator/distance/KSDistance.xtend47
-rw-r--r--Metrics/Metrics-Calculation/ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator/src/ca/mcgill/ecse/dslreasoner/realistic/metrics/calculator/graph/Graph.xtend20
-rw-r--r--Metrics/Metrics-Calculation/ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator/src/ca/mcgill/ecse/dslreasoner/realistic/metrics/calculator/input/PartialInterpretationReader.xtend7
-rw-r--r--Metrics/Metrics-Calculation/ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator/src/ca/mcgill/ecse/dslreasoner/realistic/metrics/calculator/io/CsvFileWriter.xtend (renamed from Metrics/Metrics-Calculation/ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator/src/ca/mcgill/ecse/dslreasoner/realistic/metrics/calculator/output/CsvFileWriter.xtend)2
-rw-r--r--Metrics/Metrics-Calculation/ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator/src/ca/mcgill/ecse/dslreasoner/realistic/metrics/calculator/io/GraphReader.xtend (renamed from Metrics/Metrics-Calculation/ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator/src/ca/mcgill/ecse/dslreasoner/realistic/metrics/calculator/input/GraphReader.xtend)2
-rw-r--r--Metrics/Metrics-Calculation/ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator/src/ca/mcgill/ecse/dslreasoner/realistic/metrics/calculator/io/RepMetricsReader.xtend79
-rw-r--r--Metrics/Metrics-Calculation/ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator/src/ca/mcgill/ecse/dslreasoner/realistic/metrics/calculator/metrics/Metric.xtend1
-rw-r--r--Metrics/Metrics-Calculation/ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator/src/ca/mcgill/ecse/dslreasoner/realistic/metrics/calculator/metrics/MetricSampleGroup.xtend9
-rw-r--r--Metrics/Metrics-Calculation/ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator/src/ca/mcgill/ecse/dslreasoner/realistic/metrics/calculator/metrics/MultiplexParticipationCoefficientMetric.xtend59
-rw-r--r--Metrics/Metrics-Calculation/ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator/src/ca/mcgill/ecse/dslreasoner/realistic/metrics/calculator/metrics/NodeActivityMetric.xtend16
-rw-r--r--Metrics/Metrics-Calculation/ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator/src/ca/mcgill/ecse/dslreasoner/realistic/metrics/calculator/metrics/OutDegreeMetric.xtend15
14 files changed, 273 insertions, 38 deletions
diff --git a/Metrics/Metrics-Calculation/ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator/src/ca/mcgill/ecse/dslreasoner/realistic/metrics/calculator/app/Domain.xtend b/Metrics/Metrics-Calculation/ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator/src/ca/mcgill/ecse/dslreasoner/realistic/metrics/calculator/app/Domain.xtend
new file mode 100644
index 00000000..8351e96b
--- /dev/null
+++ b/Metrics/Metrics-Calculation/ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator/src/ca/mcgill/ecse/dslreasoner/realistic/metrics/calculator/app/Domain.xtend
@@ -0,0 +1,5 @@
1package ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator.app
2
3enum Domain{
4 Yakinduum
5} \ No newline at end of file
diff --git a/Metrics/Metrics-Calculation/ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator/src/ca/mcgill/ecse/dslreasoner/realistic/metrics/calculator/app/Main.xtend b/Metrics/Metrics-Calculation/ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator/src/ca/mcgill/ecse/dslreasoner/realistic/metrics/calculator/app/Main.xtend
index 15df0dde..cf871ead 100644
--- a/Metrics/Metrics-Calculation/ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator/src/ca/mcgill/ecse/dslreasoner/realistic/metrics/calculator/app/Main.xtend
+++ b/Metrics/Metrics-Calculation/ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator/src/ca/mcgill/ecse/dslreasoner/realistic/metrics/calculator/app/Main.xtend
@@ -1,8 +1,8 @@
1package ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator.app 1package ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator.app
2 2
3import ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator.graph.EMFGraph 3import ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator.graph.EMFGraph
4import ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator.input.GraphReader 4import ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator.io.CsvFileWriter
5import ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator.output.CsvFileWriter 5import ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator.io.GraphReader
6import hu.bme.mit.inf.dslreasoner.domains.yakindu.sgraph.yakindumm.impl.YakindummPackageImpl 6import hu.bme.mit.inf.dslreasoner.domains.yakindu.sgraph.yakindumm.impl.YakindummPackageImpl
7import java.util.ArrayList 7import java.util.ArrayList
8 8
diff --git a/Metrics/Metrics-Calculation/ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator/src/ca/mcgill/ecse/dslreasoner/realistic/metrics/calculator/app/PartialInterpretationMetric.xtend b/Metrics/Metrics-Calculation/ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator/src/ca/mcgill/ecse/dslreasoner/realistic/metrics/calculator/app/PartialInterpretationMetric.xtend
index 0e505d30..cdd06027 100644
--- a/Metrics/Metrics-Calculation/ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator/src/ca/mcgill/ecse/dslreasoner/realistic/metrics/calculator/app/PartialInterpretationMetric.xtend
+++ b/Metrics/Metrics-Calculation/ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator/src/ca/mcgill/ecse/dslreasoner/realistic/metrics/calculator/app/PartialInterpretationMetric.xtend
@@ -1,11 +1,12 @@
1package ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator.app 1package ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator.app
2 2
3import ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator.distance.KSDistance
3import ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator.graph.PartialInterpretationGraph 4import ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator.graph.PartialInterpretationGraph
5import ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator.io.CsvFileWriter
4import ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator.metrics.Metric 6import ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator.metrics.Metric
5import ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator.metrics.MultiplexParticipationCoefficientMetric 7import ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator.metrics.MultiplexParticipationCoefficientMetric
6import ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator.metrics.NodeActivityMetric 8import ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator.metrics.NodeActivityMetric
7import ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator.metrics.OutDegreeMetric 9import ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator.metrics.OutDegreeMetric
8import ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator.output.CsvFileWriter
9import hu.bme.mit.inf.dslreasoner.viatrasolver.partialinterpretationlanguage.partialinterpretation.PartialInterpretation 10import hu.bme.mit.inf.dslreasoner.viatrasolver.partialinterpretationlanguage.partialinterpretation.PartialInterpretation
10import java.io.File 11import java.io.File
11import java.io.FileNotFoundException 12import java.io.FileNotFoundException
@@ -17,10 +18,28 @@ import org.eclipse.viatra.dse.api.Solution
17 18
18class PartialInterpretationMetric { 19class PartialInterpretationMetric {
19 var static state = 0; 20 var static state = 0;
21 var static KSDistance ks;
20 22
21 def static void initPaths(){ 23 def static void initPaths(){
22 new File("debug/metric/").mkdir(); 24 new File("debug/metric/").mkdir();
23 new File("debug/metric/trajectories/").mkdir(); 25 new File("debug/metric/trajectories/").mkdir();
26 ks = new KSDistance(Domain.Yakinduum);
27 }
28
29 def static MetricDistanceGroup calculateMetricDistance(PartialInterpretation partial){
30 val metrics = new ArrayList<Metric>();
31 metrics.add(new OutDegreeMetric());
32 metrics.add(new NodeActivityMetric());
33 metrics.add(new MultiplexParticipationCoefficientMetric());
34
35 val metricCalculator = new PartialInterpretationGraph(partial, metrics, null);
36 var metricSamples = metricCalculator.evaluateAllMetricsToSamples();
37
38 var mpc = ks.mpcDistance(metricSamples.mpcSamples);
39 var na = ks.naDistance(metricSamples.naSamples);
40 var outDegree = ks.outDegreeDistance(metricSamples.outDegreeSamples);
41
42 return new MetricDistanceGroup(mpc, na, outDegree);
24 } 43 }
25 44
26 // calculate the metrics for a state 45 // calculate the metrics for a state
@@ -78,4 +97,28 @@ class PartialInterpretationMetric {
78 } 97 }
79 } 98 }
80 } 99 }
100}
101
102class MetricDistanceGroup{
103 var double mpcDistance;
104 var double naDistance;
105 var double outDegreeDistance;
106
107 new(double mpcDistance, double naDistance, double outDegreeDistance){
108 this.mpcDistance = mpcDistance;
109 this.naDistance = naDistance;
110 this.outDegreeDistance = outDegreeDistance;
111 }
112
113 def double getMPCDistance(){
114 return this.mpcDistance
115 }
116
117 def double getNADistance(){
118 return this.naDistance
119 }
120
121 def double getOutDegreeDistance(){
122 return this.outDegreeDistance
123 }
81} \ No newline at end of file 124} \ No newline at end of file
diff --git a/Metrics/Metrics-Calculation/ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator/src/ca/mcgill/ecse/dslreasoner/realistic/metrics/calculator/distance/KSDistance.xtend b/Metrics/Metrics-Calculation/ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator/src/ca/mcgill/ecse/dslreasoner/realistic/metrics/calculator/distance/KSDistance.xtend
new file mode 100644
index 00000000..1fb21529
--- /dev/null
+++ b/Metrics/Metrics-Calculation/ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator/src/ca/mcgill/ecse/dslreasoner/realistic/metrics/calculator/distance/KSDistance.xtend
@@ -0,0 +1,47 @@
1package ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator.distance
2
3import ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator.app.Domain
4import java.util.List
5import org.apache.commons.math3.stat.inference.KolmogorovSmirnovTest
6import ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator.io.RepMetricsReader
7
8class KSDistance {
9 var static ksTester = new KolmogorovSmirnovTest();
10 var double[] mpcSamples;
11 var double[] naSamples;
12 var double[] outDegreeSamples;
13
14 new(Domain d){
15 var metrics = RepMetricsReader.read(d);
16 mpcSamples = metrics.mpcSamples;
17 naSamples = metrics.naSamples.stream.mapToDouble([it]).toArray();
18 outDegreeSamples = metrics.outDegreeSamples.stream.mapToDouble([it]).toArray();
19 }
20
21 def double mpcDistance(List<Double> samples){
22 // map list to array
23 var arr = samples.stream.mapToDouble([it]).toArray();
24
25 //if the size of array is smaller than 2, ks distance cannot be performed, simply return 1
26 if(arr.size < 2) return 1;
27 return ksTester.kolmogorovSmirnovStatistic(mpcSamples, arr);
28 }
29
30 def double naDistance(List<Double> samples){
31 // map list to array
32 var arr = samples.stream.mapToDouble([it]).toArray();
33
34 //if the size of array is smaller than 2, ks distance cannot be performed, simply return 1
35 if(arr.size < 2) return 1;
36 return ksTester.kolmogorovSmirnovStatistic(naSamples as double[], arr);
37 }
38
39 def double outDegreeDistance(List<Double> samples){
40 // map list to array
41 var arr = samples.stream.mapToDouble([it]).toArray();
42
43 //if the size of array is smaller than 2, ks distance cannot be performed, simply return 1
44 if(arr.size < 2) return 1;
45 return ksTester.kolmogorovSmirnovStatistic(outDegreeSamples, arr);
46 }
47} \ No newline at end of file
diff --git a/Metrics/Metrics-Calculation/ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator/src/ca/mcgill/ecse/dslreasoner/realistic/metrics/calculator/graph/Graph.xtend b/Metrics/Metrics-Calculation/ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator/src/ca/mcgill/ecse/dslreasoner/realistic/metrics/calculator/graph/Graph.xtend
index 6d65367f..cf4aedba 100644
--- a/Metrics/Metrics-Calculation/ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator/src/ca/mcgill/ecse/dslreasoner/realistic/metrics/calculator/graph/Graph.xtend
+++ b/Metrics/Metrics-Calculation/ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator/src/ca/mcgill/ecse/dslreasoner/realistic/metrics/calculator/graph/Graph.xtend
@@ -1,8 +1,12 @@
1package ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator.graph 1package ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator.graph
2 2
3import ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator.metrics.Metric 3import ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator.metrics.Metric
4import ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator.metrics.MetricSampleGroup
4import java.util.ArrayList 5import java.util.ArrayList
5import java.util.List 6import java.util.List
7import ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator.metrics.MultiplexParticipationCoefficientMetric
8import ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator.metrics.NodeActivityMetric
9import ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator.metrics.OutDegreeMetric
6 10
7abstract class Graph { 11abstract class Graph {
8 12
@@ -33,6 +37,22 @@ abstract class Graph {
33 return result; 37 return result;
34 } 38 }
35 39
40 def MetricSampleGroup evaluateAllMetricsToSamples(){
41 var sample = new MetricSampleGroup();
42
43 for(metric : this.metrics){
44 if(metric instanceof MultiplexParticipationCoefficientMetric){
45 sample.mpcSamples = metric.evaluateSamples(this.statistic);
46 }else if(metric instanceof NodeActivityMetric){
47 sample.naSamples = metric.evaluateSamples(this.statistic);
48 }else if(metric instanceof OutDegreeMetric){
49 sample.outDegreeSamples = metric.evaluateSamples(this.statistic);
50 }
51 }
52
53 return sample;
54 }
55
36 def void setBasicInformation(ArrayList<ArrayList<String>> result); 56 def void setBasicInformation(ArrayList<ArrayList<String>> result);
37 57
38 def GraphStatistic getStatistic(); 58 def GraphStatistic getStatistic();
diff --git a/Metrics/Metrics-Calculation/ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator/src/ca/mcgill/ecse/dslreasoner/realistic/metrics/calculator/input/PartialInterpretationReader.xtend b/Metrics/Metrics-Calculation/ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator/src/ca/mcgill/ecse/dslreasoner/realistic/metrics/calculator/input/PartialInterpretationReader.xtend
deleted file mode 100644
index dbaf36b2..00000000
--- a/Metrics/Metrics-Calculation/ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator/src/ca/mcgill/ecse/dslreasoner/realistic/metrics/calculator/input/PartialInterpretationReader.xtend
+++ /dev/null
@@ -1,7 +0,0 @@
1package ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator.input
2
3import hu.bme.mit.inf.dslreasoner.viatrasolver.partialinterpretationlanguage.partialinterpretation.PartialInterpretation
4
5class PartialInterpretationReader {
6
7} \ No newline at end of file
diff --git a/Metrics/Metrics-Calculation/ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator/src/ca/mcgill/ecse/dslreasoner/realistic/metrics/calculator/output/CsvFileWriter.xtend b/Metrics/Metrics-Calculation/ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator/src/ca/mcgill/ecse/dslreasoner/realistic/metrics/calculator/io/CsvFileWriter.xtend
index 1dd204a0..bed356e9 100644
--- a/Metrics/Metrics-Calculation/ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator/src/ca/mcgill/ecse/dslreasoner/realistic/metrics/calculator/output/CsvFileWriter.xtend
+++ b/Metrics/Metrics-Calculation/ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator/src/ca/mcgill/ecse/dslreasoner/realistic/metrics/calculator/io/CsvFileWriter.xtend
@@ -1,4 +1,4 @@
1package ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator.output; 1package ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator.io;
2 2
3import java.io.File 3import java.io.File
4import java.io.FileNotFoundException 4import java.io.FileNotFoundException
diff --git a/Metrics/Metrics-Calculation/ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator/src/ca/mcgill/ecse/dslreasoner/realistic/metrics/calculator/input/GraphReader.xtend b/Metrics/Metrics-Calculation/ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator/src/ca/mcgill/ecse/dslreasoner/realistic/metrics/calculator/io/GraphReader.xtend
index 56bf95a3..fc56e142 100644
--- a/Metrics/Metrics-Calculation/ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator/src/ca/mcgill/ecse/dslreasoner/realistic/metrics/calculator/input/GraphReader.xtend
+++ b/Metrics/Metrics-Calculation/ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator/src/ca/mcgill/ecse/dslreasoner/realistic/metrics/calculator/io/GraphReader.xtend
@@ -1,4 +1,4 @@
1package ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator.input 1package ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator.io;
2 2
3import ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator.graph.EMFGraph 3import ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator.graph.EMFGraph
4import ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator.metrics.Metric 4import ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator.metrics.Metric
diff --git a/Metrics/Metrics-Calculation/ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator/src/ca/mcgill/ecse/dslreasoner/realistic/metrics/calculator/io/RepMetricsReader.xtend b/Metrics/Metrics-Calculation/ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator/src/ca/mcgill/ecse/dslreasoner/realistic/metrics/calculator/io/RepMetricsReader.xtend
new file mode 100644
index 00000000..867ddd1a
--- /dev/null
+++ b/Metrics/Metrics-Calculation/ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator/src/ca/mcgill/ecse/dslreasoner/realistic/metrics/calculator/io/RepMetricsReader.xtend
@@ -0,0 +1,79 @@
1package ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator.io
2
3import ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator.app.Domain
4import ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator.metrics.MultiplexParticipationCoefficientMetric
5import ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator.metrics.NodeActivityMetric
6import ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator.metrics.OutDegreeMetric
7import java.io.File
8import java.util.List
9import java.util.Scanner
10import ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator.metrics.MetricSampleGroup
11
12/**
13 * Read the sample of the distribution of a metric provided the csv file of the metric
14 */
15class RepMetricsReader {
16 static def read(Domain d){
17 var domainRepPath = CsvDataName.REP_PATH + d.name + '/';
18 var rep = new MetricSampleGroup()
19 rep.mpcSamples = readFile(domainRepPath + CsvDataName.MPC_REP, MultiplexParticipationCoefficientMetric.valueName,
20 MultiplexParticipationCoefficientMetric.countName).map[Double.parseDouble(it)];
21 rep.naSamples = readFile(domainRepPath+CsvDataName.NA_REP, NodeActivityMetric.valueName, NodeActivityMetric.countName
22 ).map[Double.parseDouble(it)];
23 rep.outDegreeSamples = readFile(domainRepPath+CsvDataName.OUT_D_REP, OutDegreeMetric.valueName, OutDegreeMetric.countName
24 ).map[Double.parseDouble(it)];
25 return rep;
26 }
27
28 /**
29 * read metric data and parse it to samples
30 */
31 private static def List<String> readFile(String filename, String valueDataName, String countDataName){
32 var s = new Scanner(new File(filename));
33 val counts = newArrayList();
34 val values = newArrayList();
35 //read data from csv
36 while(s.hasNext()){
37 var data = s.nextLine().split(',');
38
39 if(data.size >= 1){
40 if(data.get(0).equals(countDataName)){
41 //add all data with parsing them as integers
42 counts.addAll(data.subList(1, data.size()).map[Integer.parseInt(it)]);
43 }else if(data.get(0).equals(valueDataName)){
44 //add all data without parsing (there can be either double or string, to be parsed later)
45 values.addAll(data.subList(1, data.size()));
46 }
47 }
48 }
49
50 return createSamples(counts, values);
51 }
52
53 // create samples from values and counts
54 private static def List<String> createSamples(List<Integer> counts, List<String> values){
55 val samples = newArrayList();
56
57 if(counts.size() != values.size()){
58 throw new RuntimeException("counts and values should have the same size!");
59 }
60
61 for(var i = 0; i < counts.size(); i++){
62 for(var j = 0; j < counts.get(i); j++){
63 samples.add(values.get(i));
64 }
65 }
66
67 return samples;
68 }
69
70
71}
72
73class CsvDataName{
74 public static val REP_PATH = 'data/';
75 public static val MPC_REP = 'mpc_rep.csv';
76 public static val NA_REP = 'na_rep.csv';
77 public static val OUT_D_REP = 'out_d_rep.csv';
78}
79
diff --git a/Metrics/Metrics-Calculation/ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator/src/ca/mcgill/ecse/dslreasoner/realistic/metrics/calculator/metrics/Metric.xtend b/Metrics/Metrics-Calculation/ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator/src/ca/mcgill/ecse/dslreasoner/realistic/metrics/calculator/metrics/Metric.xtend
index ea52009a..38ef72f2 100644
--- a/Metrics/Metrics-Calculation/ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator/src/ca/mcgill/ecse/dslreasoner/realistic/metrics/calculator/metrics/Metric.xtend
+++ b/Metrics/Metrics-Calculation/ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator/src/ca/mcgill/ecse/dslreasoner/realistic/metrics/calculator/metrics/Metric.xtend
@@ -4,4 +4,5 @@ import ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator.graph.GraphStatis
4 4
5abstract class Metric { 5abstract class Metric {
6 abstract def String[][] evaluate(GraphStatistic g); 6 abstract def String[][] evaluate(GraphStatistic g);
7 abstract def double[] evaluateSamples(GraphStatistic g);
7} \ No newline at end of file 8} \ No newline at end of file
diff --git a/Metrics/Metrics-Calculation/ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator/src/ca/mcgill/ecse/dslreasoner/realistic/metrics/calculator/metrics/MetricSampleGroup.xtend b/Metrics/Metrics-Calculation/ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator/src/ca/mcgill/ecse/dslreasoner/realistic/metrics/calculator/metrics/MetricSampleGroup.xtend
new file mode 100644
index 00000000..8cd3daee
--- /dev/null
+++ b/Metrics/Metrics-Calculation/ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator/src/ca/mcgill/ecse/dslreasoner/realistic/metrics/calculator/metrics/MetricSampleGroup.xtend
@@ -0,0 +1,9 @@
1package ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator.metrics
2
3import java.util.List
4
5class MetricSampleGroup{
6 public var List<Double> mpcSamples;
7 public var List<Double> naSamples;
8 public var List<Double> outDegreeSamples;
9} \ No newline at end of file
diff --git a/Metrics/Metrics-Calculation/ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator/src/ca/mcgill/ecse/dslreasoner/realistic/metrics/calculator/metrics/MultiplexParticipationCoefficientMetric.xtend b/Metrics/Metrics-Calculation/ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator/src/ca/mcgill/ecse/dslreasoner/realistic/metrics/calculator/metrics/MultiplexParticipationCoefficientMetric.xtend
index 7bd48754..d9c88bb4 100644
--- a/Metrics/Metrics-Calculation/ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator/src/ca/mcgill/ecse/dslreasoner/realistic/metrics/calculator/metrics/MultiplexParticipationCoefficientMetric.xtend
+++ b/Metrics/Metrics-Calculation/ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator/src/ca/mcgill/ecse/dslreasoner/realistic/metrics/calculator/metrics/MultiplexParticipationCoefficientMetric.xtend
@@ -2,11 +2,13 @@ package ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator.metrics
2 2
3import ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator.graph.GraphStatistic 3import ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator.graph.GraphStatistic
4import java.text.DecimalFormat 4import java.text.DecimalFormat
5import java.util.ArrayList
5import java.util.HashMap 6import java.util.HashMap
7import org.eclipse.emf.ecore.EObject
6 8
7class MultiplexParticipationCoefficientMetric extends Metric { 9class MultiplexParticipationCoefficientMetric extends Metric {
8 static val countName = "MPCCount"; 10 public static val countName = "MPCCount";
9 static val valueName = "MPCValue"; 11 public static val valueName = "MPCValue";
10 12
11 13
12 override evaluate(GraphStatistic g) { 14 override evaluate(GraphStatistic g) {
@@ -18,26 +20,7 @@ class MultiplexParticipationCoefficientMetric extends Metric {
18 val map = new HashMap<String, Integer>(); 20 val map = new HashMap<String, Integer>();
19 //calculate the metric distribution 21 //calculate the metric distribution
20 g.allNodes.forEach[n| 22 g.allNodes.forEach[n|
21 val edgeCounts = g.outDegree(n) + g.inDegree(n); 23 var coef = calculateMPC(n, g, typeCounts);
22
23 var coef = 0.0;
24
25 for(type : g.allTypes){
26 val degree = g.dimentionalDegree(n, type) as double;
27 coef += Math.pow(degree / edgeCounts, 2);
28 }
29 coef = 1 - coef;
30 coef = coef * typeCounts / (typeCounts-1);
31
32 //Consider the case that either typeCounts-1 or the edgeCounts could be 0 in some situation
33 //in this case the metric should be evaluated to 0
34 if(typeCounts == 1){
35 println("bad");
36 }
37
38 if(Double.isNaN(coef)){
39 coef = 0;
40 }
41 24
42 //format number to String 25 //format number to String
43 val value = formatter.format(coef); 26 val value = formatter.format(coef);
@@ -62,4 +45,36 @@ class MultiplexParticipationCoefficientMetric extends Metric {
62 45
63 return datas; 46 return datas;
64 } 47 }
48
49 override evaluateSamples(GraphStatistic g){
50 val samples = new ArrayList<Double>();
51 val typeCounts = g.allTypes.size;
52 //calculate the metric distribution
53 g.allNodes.forEach[
54 samples.add(calculateMPC(it, g, typeCounts));
55 ]
56
57 return samples;
58 }
59
60 def double calculateMPC(EObject n, GraphStatistic g, int typeCounts){
61 val edgeCounts = g.outDegree(n) + g.inDegree(n);
62
63 var coef = 0.0;
64
65 for(type : g.allTypes){
66 val degree = g.dimentionalDegree(n, type) as double;
67 coef += Math.pow(degree / edgeCounts, 2);
68 }
69 coef = 1 - coef;
70 coef = coef * typeCounts / (typeCounts-1);
71
72 //Consider the case that either typeCounts-1 or the edgeCounts could be 0 in some situation
73 //in this case the metric should be evaluated to 0
74 if(Double.isNaN(coef)){
75 coef = 0;
76 }
77
78 return coef;
79 }
65} \ No newline at end of file 80} \ No newline at end of file
diff --git a/Metrics/Metrics-Calculation/ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator/src/ca/mcgill/ecse/dslreasoner/realistic/metrics/calculator/metrics/NodeActivityMetric.xtend b/Metrics/Metrics-Calculation/ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator/src/ca/mcgill/ecse/dslreasoner/realistic/metrics/calculator/metrics/NodeActivityMetric.xtend
index 297bdd14..fbf06c47 100644
--- a/Metrics/Metrics-Calculation/ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator/src/ca/mcgill/ecse/dslreasoner/realistic/metrics/calculator/metrics/NodeActivityMetric.xtend
+++ b/Metrics/Metrics-Calculation/ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator/src/ca/mcgill/ecse/dslreasoner/realistic/metrics/calculator/metrics/NodeActivityMetric.xtend
@@ -1,11 +1,12 @@
1package ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator.metrics 1package ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator.metrics
2 2
3import ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator.graph.GraphStatistic 3import ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator.graph.GraphStatistic
4import java.util.ArrayList
4import java.util.HashMap 5import java.util.HashMap
5 6
6class NodeActivityMetric extends Metric { 7class NodeActivityMetric extends Metric {
7 static val countName = "NACount"; 8 public static val countName = "NACount";
8 static val valueName = "NAValue"; 9 public static val valueName = "NAValue";
9 10
10 override evaluate(GraphStatistic g) { 11 override evaluate(GraphStatistic g) {
11 val map = new HashMap<Integer, Integer>(); 12 val map = new HashMap<Integer, Integer>();
@@ -34,4 +35,15 @@ class NodeActivityMetric extends Metric {
34 35
35 return datas; 36 return datas;
36 } 37 }
38
39 override evaluateSamples(GraphStatistic g){
40 val samples = new ArrayList<Double>();
41
42 //calculate the metric distribution
43 g.allNodes.forEach[
44 samples.add(g.numOfEdgeTypes(it) as double);
45 ]
46
47 return samples;
48 }
37} \ No newline at end of file 49} \ No newline at end of file
diff --git a/Metrics/Metrics-Calculation/ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator/src/ca/mcgill/ecse/dslreasoner/realistic/metrics/calculator/metrics/OutDegreeMetric.xtend b/Metrics/Metrics-Calculation/ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator/src/ca/mcgill/ecse/dslreasoner/realistic/metrics/calculator/metrics/OutDegreeMetric.xtend
index 1ba6c8c7..55046b14 100644
--- a/Metrics/Metrics-Calculation/ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator/src/ca/mcgill/ecse/dslreasoner/realistic/metrics/calculator/metrics/OutDegreeMetric.xtend
+++ b/Metrics/Metrics-Calculation/ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator/src/ca/mcgill/ecse/dslreasoner/realistic/metrics/calculator/metrics/OutDegreeMetric.xtend
@@ -1,11 +1,12 @@
1package ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator.metrics 1package ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator.metrics
2 2
3import ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator.graph.GraphStatistic 3import ca.mcgill.ecse.dslreasoner.realistic.metrics.calculator.graph.GraphStatistic
4import java.util.ArrayList
4import java.util.HashMap 5import java.util.HashMap
5 6
6class OutDegreeMetric extends Metric { 7class OutDegreeMetric extends Metric {
7 static val countName = "OutDegreeCount"; 8 public static val countName = "OutDegreeCount";
8 static val valueName = "OutDegreeValue"; 9 public static val valueName = "OutDegreeValue";
9 10
10 override evaluate(GraphStatistic g) { 11 override evaluate(GraphStatistic g) {
11 val map = new HashMap<Integer, Integer>(); 12 val map = new HashMap<Integer, Integer>();
@@ -34,5 +35,15 @@ class OutDegreeMetric extends Metric {
34 return datas; 35 return datas;
35 } 36 }
36 37
38 override evaluateSamples(GraphStatistic g){
39 val samples = new ArrayList<Double>();
40
41 //calculate the metric distribution
42 g.allNodes.forEach[
43 samples.add(g.outDegree(it) as double);
44 ]
45
46 return samples;
47 }
37 48
38} \ No newline at end of file 49} \ No newline at end of file